PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g044520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 382aa    MW: 43343.4 Da    PI: 8.4416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g044520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-05116139123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ C+++F ++ nL +H +  H
  Csa08g044520.1 116 YFCGVCDRRFYTNANLINHFKQiH 139
                     78*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.8E-598135IPR029060PIN domain-like
SuperFamilySSF576673.22E-5109151No hitNo description
PROSITE profilePS5015711.074116144IPR007087Zinc finger, C2H2
PROSITE patternPS000280118139IPR007087Zinc finger, C2H2
CDDcd061674.77E-14182268No hitNo description
PfamPF019362.0E-7187269IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.8E-5201268IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MFPSFVQRVR SPKTQITTLN SIKGFGFSSL INLKPQIRTG VFWDLDNKPP ASFPPYDAAV  60
KLRTAASSFG FVKLMVAYAN RHAFSYVPLV VREERRDRKL LNELENTGKV KPPEPYFCGV  120
CDRRFYTNAN LINHFKQIHE TEHQKRMRQI ESSKGHQRVR LLAKYSMKIE KYKRAARKVL  180
TPKEGYGLAD ELKRAGFWVK MVSDKPEAAD VALKEHMVDV MDKREVECVV LVSDDSGYAG  240
VLREAKERCL RTVVIGDLNE GALKRVADVS YSWKEVVMGK AKKEVEKVVG KWKDRDVLKK  300
LEWSYDPALE KERGGSCGVW DYEFDWDDDE IENVTEVEIG DGGDWWKIDN EDGVASSRPC  360
GSHHTIVGID CAEAANNNLG S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399ERRDRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422196.10.0PREDICTED: uncharacterized protein LOC104707520 isoform X3
RefseqXP_010422195.10.0PREDICTED: uncharacterized protein LOC104707520 isoform X2
TrEMBLR0HCK60.0R0HCK6_9BRAS; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__3166__AT4G12240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein